SNP Profiles of SPA 9 [COL] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	GG	AC	AA	AG	AG	AC	AA	AG	AG	AG	AG	AC
1._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
2._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
3._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
4._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
5._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
6._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
7._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
8._GC-01-099-5-16	CC	AC	GG	AC	TT	CT	AG	GT	AA	CT	AG	CT	CT	GT
9._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
10._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
11._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
12._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
13._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
14._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
15._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
16._SPA_9_[COL]	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
17._RUQ_235	_	_	_	_	_	CT	AG	_	AA	_	_	_	_	_
18._RUQ_235	_	_	_	_	_	-	_	GT	_	_	AG	_	_	_
19._SPA_9_[COL]	_	_	_	_	_	CC	GG	_	AA	_	_	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	AG	AG	AC	AG	AG	AG	AA	GG	AA	AC	AG	AG
1._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	_	CT
2._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	_	CT
3._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	CT	CT
4._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	CT	CT
5._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	CT	CT
6._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	CT	CT
7._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	CT	CT
8._GC-01-099-5-16	CT	GT	CT	TT	AC	AG	CT	CT	TT	CC	AA	GT	CT	CT
9._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	_	CT
10._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	_	CT
11._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	CT	CT
12._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	CT	CT
13._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	CT	CT
14._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	CT	CT
15._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	CT	CT
16._SPA_9_[COL]	_	GT	CT	_	AC	_	CT	_	TT	CC	AA	GT	CT	CT
17._RUQ_235	_	GT	CT	_	AC	_	CT	_	TT	CC	AG	GT	CT	CT
18._RUQ_235	_	GT	_	CT	_	_	_	CT	TT	CC	AA	-	TT	_
19._SPA_9_[COL]	_	GT	TT	_	AC	_	TT	_	TT	CG	AA	GG	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AT	GG	AC	GG	AG	GG	AG	CG	AC	TT	AT	AG	AG	AA
1._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
2._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
3._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
4._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
5._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
6._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
7._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
8._GC-01-099-5-16	AT	GG	AC	CC	AG	GG	CT	CG	GT	AA	AT	AG	AG	AA
9._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
10._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
11._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
12._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
13._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
14._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
15._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
16._SPA_9_[COL]	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
17._RUQ_235	_	_	AC	CC	AG	_	CT	CG	_	_	AT	_	_	AA
18._RUQ_235	_	GG	-	CC	-	_	CT	_	_	_	_	-	-	-
19._SPA_9_[COL]	_	_	AC	CG	AA	_	CT	GG	_	_	TT	_	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	AA	GG	GG	AT	CG	AG	AC	AC	AG	AC	AG	CG	CC
1._GC-01-099-5-16	CC	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
2._GC-01-099-5-16	CC	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
3._GC-01-099-5-16	_	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
4._GC-01-099-5-16	CC	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
5._GC-01-099-5-16	CC	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
6._GC-01-099-5-16	CC	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
7._GC-01-099-5-16	CC	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
8._GC-01-099-5-16	CC	AA	GG	GG	AT	CG	_	AC	AC	AG	GT	AG	CG	CC
9._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
10._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
11._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
12._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
13._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
14._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
15._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
16._SPA_9_[COL]	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
17._RUQ_235	_	_	_	GG	_	_	_	_	AC	_	GT	_	CG	CC
18._RUQ_235	_	_	_	_	_	CC	_	_	AC	_	GT	_	CG	-
19._SPA_9_[COL]	_	_	_	GG	_	_	_	_	CC	_	GG	_	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	AG	AA	AA	AG	CC	AG	AG	AA	CC	AA	CC	CG	AA
1._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
2._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
3._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
4._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
5._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
6._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
7._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
8._GC-01-099-5-16	CC	CT	TT	AG	AG	GG	AG	CT	TT	GG	TT	CC	CG	AA
9._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
10._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
11._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
12._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
13._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
14._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
15._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
16._SPA_9_[COL]	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
17._RUQ_235	_	_	TT	_	_	GG	_	_	_	_	_	_	_	_
18._RUQ_235	_	CT	TT	_	_	GG	AG	-	_	_	-	CC	_	_
19._SPA_9_[COL]	_	_	CC	_	_	GG	_	_	_	_	_	_	_	_

	71	72	73	74	75	76	77	78	79	80	81
_Input profile	CG	AG	GG	AG	CC	AG	CG	AG	AT	AG	AA	X_X	X_X	X_X
1._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
2._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
3._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
4._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
5._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
6._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
7._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
8._GC-01-099-5-16	CG	CT	CC	AG	CC	CT	CG	CT	AT	CT	AA	X_X	X_X	X_X
9._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
10._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
11._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
12._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
13._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
14._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
15._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
16._SPA_9_[COL]	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
17._RUQ_235	CG	CT	_	_	_	CT	CG	_	AT	CT	AA	X_X	X_X	X_X
18._RUQ_235	CG	-	_	-	-	_	_	_	_	_	AA	X_X	X_X	X_X
19._SPA_9_[COL]	CG	CC	_	_	_	CC	GG	_	AA	TT	AG	X_X	X_X	X_X

Input profile: SPA_9_[COL] RUQ_235

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

1._SPA_9_[COL] GC-01-099-5-16

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

2._SPA_9_[COL] GC-01-099-5-16

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._SPA_9_[COL] GC-01-099-5-16

53.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._SPA_9_[COL] GC-01-099-5-16

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

5._SPA_9_[COL] GC-01-099-5-16

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

6._SPA_9_[COL] GC-01-099-5-16

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._SPA_9_[COL] GC-01-099-5-16

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._SPA_9_[COL] GC-01-099-5-16

53.1 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._SPA_9_[COL]

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 9 > FP

Dapeng Zhang, 2016

10._SPA_9_[COL]

51.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 4

Dapeng Zhang, 2016

11._SPA_9_[COL]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 6 > FP

Dapeng Zhang, 2016

12._SPA_9_[COL]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 14 > F

Dapeng Zhang, 2016

13._SPA_9_[COL]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 1 > FP

Dapeng Zhang, 2016

14._SPA_9_[COL]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 5

Dapeng Zhang, 2016

15._SPA_9_[COL]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 3

Dapeng Zhang, 2016

16._SPA_9_[COL]

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._SPA_9_[COL] RUQ_235

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._SPA_9_[COL] RUQ_235

41.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._SPA_9_[COL]

36.8 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP1442	24	TcSNP1458	25	TcSNP1484
26	TcSNP150	27	TcSNP151	28	TcSNP1520	29	TcSNP154	30	TcSNP174
31	TcSNP193	32	TcSNP226	33	TcSNP230	34	TcSNP240	35	TcSNP242
36	TcSNP25	37	TcSNP28	38	TcSNP316	39	TcSNP32	40	TcSNP329
41	TcSNP364	42	TcSNP372	43	TcSNP413	44	TcSNP418	45	TcSNP42
46	TcSNP429	47	TcSNP430	48	TcSNP448	49	TcSNP497	50	TcSNP521
51	TcSNP529	52	TcSNP547	53	TcSNP560	54	TcSNP561	55	TcSNP577
56	TcSNP591	57	TcSNP60	58	TcSNP602	59	TcSNP619	60	TcSNP653
61	TcSNP689	62	TcSNP723	63	TcSNP731	64	TcSNP75	65	TcSNP751
66	TcSNP776	67	TcSNP799	68	TcSNP823	69	TcSNP836	70	TcSNP860
71	TcSNP872	72	TcSNP891	73	TcSNP894	74	TcSNP899	75	TcSNP90
76	TcSNP917	77	TcSNP929	78	TcSNP944	79	TcSNP953	80	TcSNP994
81	TcSNP998